Episode 1
Mystic Mayhem
Episode 2
Origami Tsunami
Episode 3
Donnie's Gifts
Episode 4
War and Pizza
Episode 5
Newsworthy
Episode 6
Repo Mantis
Episode 7
Down with the Sickness
Episode 8
The Fast and the Furriest
Episode 9
Mascot Melee
Episode 10
Shell in a Cell
Episode 11
Minotaur Maze
Episode 12
Bug Busters
Episode 13
The Longest Fight
Episode 14
Hypno! Part Deux
Episode 15
The Gumbus
Episode 16
Mrs. Cuddles
Episode 17
Stuck on You
Episode 18
Al Be Back
Episode 19
The Purple Jacket
Episode 20
Pizza Pit
Episode 21
Smart Lair
Episode 22
Hot Soup: The Game
Episode 23
The Evil League of Mutants
Episode 24
Late Fee
Episode 25
Bullhop
Episode 26
Mind Meld
Episode 27
Nothing But Truffle
Episode 28
Shadow of Evil
Episode 29
Portal Jacked!
Episode 30
Warren & Hypno, Sitting in a Tree
Episode 31
Operation: Normal
Episode 32
Sparring Partner
Episode 33
You Got Served
Episode 34
How to Make Enemies and Bend People to Your Will
Episode 35
Mystic Library
Episode 36
The Purple Game
Episode 37
Man vs. Sewer
Episode 38
The Mutant Menace
Episode 39
Turtle-dega Nights: The Ballad of Rat Man
Episode 40
The Ancient Art of Ninja Hide and Seek
Episode 41
One Man's Junk
Episode 42
Snow Day
Episode 43
Cloak and Swaggart
Episode 44
Jupiter Jim Ahoy!
Episode 45
Insane in the Mama Train
Episode 46
End Game
Many Unhappy Returns
Todd Scouts
Goyles, Goyles, Goyles
Flushed, but Never Forgotten
Lair Games
Breaking Purple
Repairin' the Baron
Air Turtle
Pizza Puffs
Sidekick Ahoy!
The Hidden City Job
Always Be Brownies
Mystery Meat
Raph's Ride-Along
Donnie vs. Witch Town
Hidden City's Most Wanted
Bad Hair Day
Fists of Furry
The Clothes Don't Make the Turtle
Battle Nexus: New York
Finale: E-Turtle Sunshine of the Spotless Mind (1)
Finale: Shreddy or Not (2)
Finale: Anatawa Hitorijanai (3)
Finale: Rise (4)
